DNA Research Advance Access published online on January 9, 2006
DNA Research, doi:10.1093/dnares/dsi012
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1 Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan; Present address: Dragon Genomics Center, Takara Bio Inc. 7870-15, Sakura-cho, Yokkaichi, Mie 512-1211, Japan
* To whom correspondence should be addressed. Based on the genomic sequence data of Escherichia coli K-12 strain, we have constructed a complete set of cloned individual genes encoding Histidine-tagged proteins with or without GFP fused for functional genomic analysis. Each clone encodes a protein of predicted ORF attached by Histidines and seven spacer amino acids at the N-terminal end, and five spacer amino acids and GFP at the C-terminal end. SfiI restriction sites are generated at both the N- and C-terminal boundaries of ORF upon cloning, which enables easy transfer of ORF to other vector systems by cutting with SfiI. Expression of cloned ORF is under the control of an IPTG-inducible promoter, which is strictly repressed by lacIq repressor gene product. The set of cloned ORFs described here should provide unique resources for systematic functional genomic approaches including (i) construction of DNA microarray, (ii) production and purification of proteins, (iii) analysis of protein localization by monitoring GFP fluorescence and (iv) analysis of protein-protein interaction.
Received June 4, 2004
Revised July 28, 2005
Full Papers
Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research
Masanari Kitagawa 1,
Takeshi Ara 2,
Mohammad Arifuzzaman 3,
Tomoko Ioka-Nakamichi 4,
Eiji Inamoto 4,
Hiromi Toyonaga 4,
and
Hirotada Mori 5 *
2 Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0035, Japan
3 Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan
4 CREST, JST (Japan Science and Technology)
5 Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan; Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0035, Japan; CREST, JST (Japan Science and Technology)
Hirotada Mori, E-mail: hmori{at}gtc.naist.jp
Abstract
Communicated by Michio Oishi
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