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DNA Research 2005 12(4):235-246; doi:10.1093/dnares/dsi008
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© The Author 2006. Kazusa DNA Research Institute
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions@oxfordjournals.org

Identity Elements of Archaeal tRNA

Bibekanand Mallick1, Jayprokas Chakrabarti1,2,*, Satyabrata Sahoo1, Zhumur Ghosh1 and Smarajit Das1

1Computational Biology Group (CBG), Theory Department, Indian Association for the Cultivation of Science Calcutta 700032 India
2Biogyan BF 286, Salt Lake, Calcutta 700064 India

Features unique to a transfer-RNA are recognized by the corresponding tRNA-synthetase. Keeping this in view we isolate the discriminating features of all archaeal tRNA. These are our identity elements. Further, we investigate tRNA-characteristics that delineate the different orders of Archaea.

Key words: Archaea; identity elements; AARS; tRNA secondary structure; tRNA tertiary structure; canonical introns; non-canonical introns; bulge–helix–bulge (BHB motif)

*To whom correspondence should be addressed. Tel. +91 33 24734971, ext. 281 (Off.). Fax. +91 33 24732805; E-mail: tpjc{at}iacs.res.in or biogyan{at}vsnl.net

Communicated by Michio Oishi


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