New Approach for M-Cell-Specific Molecules Screening by Comprehensive Transcriptome Analysis
1 Supramolecular Biology, International Graduate School of Arts and Sciences, Yokohama City University, Kanagawa 230-0045, Japan
2 Laboratory for Epithelial Immunobiology, Research Center for Allergy and Immunology, RIKEN, Kanagawa 230-0045, Japan
3 Research Institute for Biological Sciences, Tokyo University of Science, Noda, Chiba 278-0022, Japan
4 Department of Pathology and Laboratory Medicine, Emory Vaccine Center, School of Medicine, Emory University, Atlanta, GA 30322, USA
Received 2 June 2009; accepted 2 July 2009.
| Abstract |
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A minor population of M cells within the follicle-associated epithelium (FAE) of intestinal Peyer's patches (PPs) serves as a major portal for entry of exogenous antigens. Characterization of the mammalian M cells, including identification of M-cell surface molecules used for bacterial uptake, has been hampered by their relative rarity. In contrast, M cells constitute virtually all of the FAE cells in the avian bursa of Fabricius. We therefore performed comparative gene expression profiling of chicken and murine FAE to identify commonly expressed genes by M cells in both species. The comprehensive transcriptome analysis revealed that 28 genes were commonly up-regulated in FAE from both species. In situ hybridization revealed that annexin A10 (Anxa10) mRNA was scattered in FAE, and co-localized with Ulex europaeus agglutinin-1 binding to M cells. Whole-mount immunostaining also revealed that cellular prion protein (PrPC) was expressed on the luminal side of the apical plasma membrane of M cells, and co-localized with grycoprotein 2 that recognizes only M cells in murine PP. Our findings identify new M-cell-specific molecules through using comprehensive transcriptome analysis. These conserved molecules in M cells of mice and chickens may play essential roles in M-cell function and/or differentiation.
Key words: M cell; the bursa of Fabricius; annexin A10; cellular prion protein
| 1. Introduction |
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The mucosal surface of the gastrointestinal tract is continuously exposed to enormous numbers of commensal microorganisms and occasionally to pathogens. In this context, the gut-associated lymphoid tissue (GALT), such as Peyer's patches (PPs) and appendix, serve as sentinel for recognition and initiation of the immune response to intestinal microbes.1
The apical plasma membrane of M cells is specialized for the uptake of antigen, featuring reduced glycocalyx and lack of hydrolytic enzymes. In addition, the basal plasma membrane of M cells often is deeply invaginated to form a so-called M-cell pocket where dendritic cells (DCs) and lymphocytes migrate. This reduces the migratory distance between the apical and basal plasma membranes for antigen transport. Furthermore, reduction in the number of lysosomes as well as the activity of lysosomal hydrolases has been reported for M cells. These observations are consistent with the notion that M cells transport luminal antigens intact to the GALT lymphoid follicles. The delivered antigens are then captured by immature DCs residing in the subepithelial dome region beneath the FAE, and the antigen-primed DCs undergo maturation and migrate in the T-cell area of the GALT to present antigens to T cells, leading ultimately to the production of IgA antibodies by B cells.1
Antigen delivery through M cells is thus critical for induction of mucosal immune responses for host defense. Paradoxically, the M-cell-dependent antigen uptake can be exploited by diverse pathogenic microbes, including Salmonella spp. and Yersinia enterocolitica, as a portal for entry into the host.4
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Despite the importance of M cells in mucosal immune response as well as microbial infection, there are only a few M-cell-specific molecules so far been identified. Elucidation of M-cell-specific molecules is needed for better understanding of M cells, such as the molecular mechanisms for antigen transcytosis and invasion of microorganisms, which may lead to the development of new methods for drug delivery, vaccination as well as prevention of infectious diseases. In an attempt to identify M-cell-specific molecules, we established a method to separate murine FAE and villous epithelium (VE) for subsequent comparative transcriptome analysis.7
However, it is still difficult to identify M-cell-specific molecules, especially those expressed at low levels, because the M cells constitute only
5–10% of the FAE cells.8
The bursa of Fabricius (BF), a central lymphoid organ in birds, is essential for the diversification of the B-cell repertoire. BF contains 8000–12 000 B-cell follicles, the luminal surface for which is covered almost exclusively by M cells.2
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The bursal FAE is thus a convenient source of highly enriched M cells for the purpose of identifying M-cell-specific molecules, including the posited receptors for antigen uptake and transcytosis.
In this study, we attempted to identify M-cell specific molecules, by taking advantage of transcriptome analysis of the avian bursal FAE that is composed almost entirely of the M cells. The data obtained from chicken FAE were then paired with data obtained from murine PP FAE for comparative transcriptome analysis. M-cell-specific expression of the candidate genes was examined by quantitative PCR (Q-PCR), in situ hybridization (ISH) and immunostaining.
| 2. Materials and methods |
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2.1. Animals
Nineteen-day-old line-M chickens were purchased from the Nippon Institute Biological Science. BALB/c mice were purchased from CLEA Japan and were maintained under specific pathogen-free condition in the vivarium of RIKEN Research Center for Allergy and Immunology and Yokohama City University until use in experiments. All animal experiments were approved by the Animal Research Committee of RIKEN Yokohama Research Institute and Yokohama City University.
2.2. Preparation of bursal FAE and interfollicular epithelium
The BF was dissected from the cloaca and soaked in Hank's Buffered Salt Solution (HBSS) (GIBCO) containing black ink for 5 min at room temperature in order to visualize the FAE. After incubation, the tissue was treated with 40 mM EDTA/25 mM Hepes (pH 7.4) in HBSS for 5 min at room temperature to collect bursal FAE, majority of which is liberated from interfollicular epithelium (IFE) in this condition; to recover pure bursal IFE, the tissue was treaded in the same solution for 30 min at 37°C to completely remove FAE. Bursal FAE and IFE were collected with 29G needle under stereomicroscope monitoring as described previously.7
2.3. Gene expression analysis
Chicken genome-wide gene expression was examined by using GeneChip Chicken Genome Array (Affymetrix) containing oligonucleotide probe sets for 32 733 transcripts and expressed sequence tags. Total RNA was extracted from FAE and IFE using RNeasy Mini Kit (Qiagen) according to the manufacturer's instructions. Double-stranded cDNA was synthesized from 0.1 µg of total RNA by two-cycle target labeling according to the manufacturer's instructions. The cDNA was subjected to in vitro transcription in the presence of biotinylated nucleotide triphosphates. The biotinylated cRNA was hybridized with a probe array for 16 h at 45°C. The hybridization was performed with pooled samples of FAE or IFE from a chicken. The hybridized products were stained with streptavidin–phycoerythrin, and then scanned with a Hewlett-Packard Gene Array Scanner. The fluorescence intensity of each probe was quantified using GeneChip Analysis Suite 5.0 software (Affymetrix). The level of gene expression was determined as the average difference using the GeneChip software. Data analysis was further performed with Genespring software version 7.0 (Silicon Genetics). Measurement values <0.01 were set at 0.01, and per-chip normalization was performed to the median of all measurements. Finally, two filtering were performed; one was to filter on expression level select raw from 100 to 61 022, and the other on flags that presence or marginal in FAE and IFE. Expression data were considered significant when they differed by at least 2-fold between FAE and IFE. All microarray data have been deposited at GEO under accession number GSE 16081.
2.4. Database analysis
The expression of candidates for M-cell-specific molecules in various tissue and immune cells was analyzed with Reference Database for Immune Cells (RefDIC: http://refdic.rcai.riken.jp).10
GOstat (http://gostat.wehi.e.du.au/) was used to find functional annotation or Gene-Ontology (GO) groups which are highly represented in the selected sets of genes.11
2.5. Q-PCR analysis
Total RNA was extracted from FAE and VE of mouse PP using RNeasy Kit (Qiagen) and was reverse-transcribed using ReverTra Ace-
(TOYOBO). Q-PCR was performed to quantify mRNA expression levels using the SYBR Premix Ex Taq and the Thermal Cycler Dice Real Time System (TAKARA). A specific primer set for each gene was as follows: Anxa10 5'-AACTTGGTCCAGGCAAACAGG-3' (forward) and 5'-ACGAACAATAGCAACCAGCAGC-3' (reverse), Prnp 5'-GGTCCCTTTGATGGAGTCTGTC-3' (forward) and 5'-TGTGGATGCTCTAGCTATCCCA-3' (reverse).
2.6. In situ hybridization
A 470 bp fragment of Anxa10 cDNA was amplified from FAE-derived cDNA by PCR using the specific primers: 5'-ATAGGATCCTAACACAACGCAGCAATG-3' (forward) and 5'-TTACTCGAGGATCATCTGCATCATGGTTTT-3' (reverse). The PCR product was digested with BamHI and XhoI, and subcloned into pcDNA3 (Invitrogen) and was used for generation of non-targeted RNA probes as a control probes or antisense RNA probes. Paraffin-embedded PP sections of mice were obtained from Genostaff. ISH was done by Genostaff. In brief, the sections were hybridized with digoxigenin labeled RNA probes at 60°C for 16 h. The bound label was detected using NBT-BCIP, an alkaline phosphate color substrate. After ISH, sections were treated with 3% hydrogen peroxide in PBS for 15 min followed by Protein Block (Dako) for 10 min. They were incubated with 0.25 mg/ml Biotinylated Ulex europaeus agglutinin-1 (UEA-1) (Vector), at 4°C overnight. After washing with PBS, the sections reacted with peroxidase conjugated streptavidin (Nichirei) for 5 min. Peroxidase activity was visualized by diaminobenzidine. The control probe treated sections were counterstained with Kernechtrot (MUTO PURE CHEMICALS).
2.7. Whole-mount immunostaining
PPs were excised from the small intestine, fixed with Cytofix/Cytoperm (BD Biosciences) for 1 h at 4°C and then incubated with 10 µg/ml anti-CD16/32 mAb (93; eBioscience)/0.1% saponin/0.5% BSA in PBS to block non-specific Fc binding. The whole-mount specimens were then stained with 2 µg/ml mouse PrP mAb (SAF-32; Cayman Chemical) or an isotype-matched control IgG (BD Biosciences) overnight at 4°C, followed by 10 µg/ml Alexa Fluor 488-conjugated anti-mouse IgG Ab (Molecular Probes). The specimens were further stained with 20 µg/ml Rhodamine-conjugated UEA-1 (Vector Laboratories) or with a glycoprotein 2 (GP2) mAb (2F11C3) followed by Alexa Fluor 555-conjugated anti-rat IgG (Invitrogen). The specimens were analyzed with a DM-IRE2 confocal laser scanning microscope and Leica confocal software (Leica Microsystems).
2.8. Statistics
Statistical analysis was performed with the Mann–Whitney U-test. Differences were considered as significant at P < 0.05.
| 3. Result and discussion |
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3.1. Comparative transcriptome analysis of chicken and murine FAE
We separated the bursal FAE and the IFE surrounding the FAE in the chicken BF by modifying the dissection method used to separate mammalian FAE cells.7
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3.2. Identification of candidates M-cell-specific molecules
We have previously identified genes specifically up-regulated in FAE compared with VE in mice.7
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3.3. Expression of Anxa10 mRNA in murine PP M cells
Having identified Anxa10 and Prnp by our comparative transcriptome analysis as candidate for M-cell-specific genes in mice, we examined their expression pattern in FAE. Because antibodies specific for annexin A10 encoded by Anxa10 were not available, we examined the cellular expression of Anxa10 by ISH. A positive signal for Anxa10 mRNA was observed in some of the cells in mouse FAE (Fig. 4A and B), whereas no signals were observed with a control probe (Fig. 4C). The Anxa10 signal co-localized with UEA-1 that recognizes M cells in FAE (Fig. 4B). The result suggests that Anxa10 mRNA is expressed specifically in M cells in the murine gut epithelium.
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Owing to the property to bind to phospholipids in a Ca2+-dependent manner, annexin family proteins are involved in various membrane-related functions.14
Among the family members, annexins A1, A2 and A6 are present on endosomal compartments and are thought to be involved in the endocytic pathway.14
In particular, annexin A6 has been proposed to be involved in budding of clathrin-coated pit.18
Annexin A6 arose from the fusion of the genes encoding annexins A5 and A1015
implicating the involvement of the latter two annexins as well in membrane traffic events in the endosomal pathways. Indeed, the network of annexin A5 reportedly bends the membrane patch into the cell and elicits budding, endocytic vesicle formation and cytoskeleton-dependent trafficking of the endocytic vesicles.19
Intriguingly, annexin A5 is expressed in M cells and implicated in endocytic transport and membrane scaffolding.12
Our findings thus suggest that annexin A10 could also be involved in M-cell-specific membrane traffic events such as antigen transcytosis.
3.4. Cellular prion protein (PrPC) expression on the apical plasma membrane of murine M cells
Prnp encodes cellular prion protein PrPC, a glycosylphosphatidylinositol (GPI)-anchored membrane protein. We performed whole-mount immunostaining of PP with a PrP mAb to determine which cell types express PrPC in mouse FAE. The expression of PrPC was observed primarily in a subpopulation of cells in the peripheral region of the FAE (Fig. 5A and C); no signal was observed with specimens stained with an isotype-matched IgG control of irrelevant specificity (Fig. 5B and D). Most of the PrPC-expressing cells were also stained with the UEA-1 lectin (Fig. 5A) and with an mAb to GP2 (Fig. 5C), a specific marker for murine PP M cells,20
although co-localization of PrPC with GP2 was apparently less frequent than with UEA-1. This is at least partly because GP2 is not expressed in all M cells but restricted to more matured M cells compared with PrPC (our unpublished observation). This observation demonstrates that PrPC is preferentially expressed by M cells in the FAE. In addition, the X–Z sectioning images obtained by confocal microscopic analysis indicated that PrPC was expressed on the apical plasma membrane of M cells (Fig. 5C), where it observed to be co-localized with GP2, which is expressed on the apical surface of M cells.20
These findings suggest that PrPC molecules are especially abundant on the apical plasma membrane of M cells.
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PrPC is the causative agent of transmissible spongiform encephalopathy. According to the prion hypothesis, the infectious isoform of prion protein, termed PrPSc, replicates by interacting with PrPC and mediating its conformational change into PrPSc.21
There is accumulating evidence indicating that diverse infectious agents and their toxins utilize GPI-anchored proteins to gain entry into host cells.27
For example, CD48 plays an important role in E. coli phagocytosis via FimH recognition in macrophages and mast cells.28
Furthermore, PrPC on macrophages has been reported to recognize surface-exposed Hsp60 of Brucella abortus and to facilitate internalization of the bacteria.29
By analogy, PrPC on M cells could also interact with Hsp60 of B. abortus. Hsp60 proteins have been recognized as immunodominant antigens of many microbes.30
Our present results suggest that PrPC on the apical plasma membrane of M cells is well placed to contribute to mucosal immunosurveillance through promoting transcytosis of B. abortus or other exogenous antigens. Further studies to elucidate PrPC function on M cells are now underway.
In conclusion, we here demonstrate that comparative transcriptomic analysis of chick bursal FAE, which is almost exclusively composed of M cells,2
and mouse FAE, which includes M cells as a minority constituents, is a useful approach to the identification of M-cell-specific molecules. In this study, we have focused on the genes that are up-regulated 2-fold or more in FAE versus IFE (for chicken) or VE (for mice). Genes up-regulated 2-fold or more in chick FAE and less than 2-fold in murine FAE could also contain M-cell-specific genes, in view of the fact that M cells constitute 5–10% of the total FAE population in mice.8
This population of the genes will be a future target in the search for other M-cell-specific genes.
| Supplementary data |
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Supplementary data are available at www.dnaresearch.oxfordjournals.org.
| Funding |
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This study was supported in part by Grants-in-Aid for Scientific Research (B) (H.O.), Young Scientists (K.H. and S.F.), Scientific Research on Innovative Areas (H.O.) and Scientific Research in Priority Areas (K.H.) from the Ministry of Education, Culture, Sports, Science and Technology of Japan and Takeda Science Foundation (K.H.).
| Acknowledgements |
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We thank Ms. Y. Yamada for secretarial assistance.
| Footnotes |
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* To whom correspondence should be addressed. Tel. +81 45-503-7031. Fax. +81 45-503-7030. E-mail: ohno{at}rcai.riken.jp
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