© 2000 by Kazusa DNA Research Institute
Complete Genome Structure of the Nitrogen-fixing Symbiotic Bacterium Mesorhizobium loti
Kazusa DNA Research Institute 1532-3 Yana, Kisarazu, Chiba 292-0812, Japan
* To whom correspondence should be addressed. Tel. +81-438-52-3933, Fax. +81-438-52-3934
The complete nucleotide sequence of the genome of a symbiotic bacterium Mesorhizobium loti strain MAFF303099 was determined. The genome of M. loti consisted of a single chromosome (7, 036, 071 bp) and two plasmids, designated as pMLa (351, 911 bp) and pMLb (208, 315 bp). The chromosome comprises 6752 potential protein-coding genes, two sets of rRNA genes and 50 tRNA genes representing 47 tRNA species. Fifty-four percent of the potential protein genes showed sequence similarity to genes of known function, 21% to hypothetical genes, and the remaining 25% hadno apparent similarity to reported genes. A 611-kb DNA segment, a highly probable candidate of a symbiotic island, was identified, and 30 genes for nitrogen fixation and 24 genes for nodulation were assigned in this region. Codon usage analysis suggested that the symbiotic islandas well as the plasmids originated andw ere transmittedfrom other genetic systems. The genomes of two plasmids, pMLa and pMLb, contained 320 and 209 potential protein-coding genes, respectively, for a variety of biological functions. These include genes for the ABC-transporter system, phosphate assimilation, two-component system, DNA replication and conjugation, but only one gene for nodulation was identified.
Key words: Mesorhizobium loti strain MAFF303099; genome sequencing; symbiosis; nodulation; nitrogen fixation; plasmid
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  H. Cai, R. Thompson, M. F. Budinich, J. R. Broadbent, and J. L. Steele Genome Sequence and Comparative Genome Analysis of Lactobacillus casei: Insights into Their Niche-Associated Evolution Gen Biol Evol, September 23, 2009; 2009(0): 239 - 257. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Karunakaran, V. K. Ramachandran, J. C. Seaman, A. K. East, B. Mouhsine, T. H. Mauchline, J. Prell, A. Skeffington, and P. S. Poole Transcriptomic Analysis of Rhizobium leguminosarum Biovar viciae in Symbiosis with Host Plants Pisum sativum and Vicia cracca J. Bacteriol., June 15, 2009; 191(12): 4002 - 4014. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Schmeisser, H. Liesegang, D. Krysciak, N. Bakkou, A. Le Quere, A. Wollherr, I. Heinemeyer, B. Morgenstern, A. Pommerening-Roser, M. Flores, et al. Rhizobium sp. Strain NGR234 Possesses a Remarkable Number of Secretion Systems Appl. Envir. Microbiol., June 15, 2009; 75(12): 4035 - 4045. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Kalloniati, D. Tsikou, V. Lampiri, M. N. Fotelli, H. Rennenberg, I. Chatzipavlidis, C. Fasseas, P. Katinakis, and E. Flemetakis Characterization of a Mesorhizobium loti {alpha}-Type Carbonic Anhydrase and Its Role in Symbiotic Nitrogen Fixation J. Bacteriol., April 15, 2009; 191(8): 2593 - 2600. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Dominguez-Ferreras, S. Munoz, J. Olivares, M. J. Soto, and J. Sanjuan Role of Potassium Uptake Systems in Sinorhizobium meliloti Osmoadaptation and Symbiotic Performance J. Bacteriol., April 1, 2009; 191(7): 2133 - 2143. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Prell, A. Bourdes, R. Karunakaran, M. Lopez-Gomez, and P. Poole Pathway of {gamma}-Aminobutyrate Metabolism in Rhizobium leguminosarum 3841 and Its Role in Symbiosis J. Bacteriol., April 1, 2009; 191(7): 2177 - 2186. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. P. White, J. Prell, V. K. Ramachandran, and P. S. Poole Characterization of a {gamma}-Aminobutyric Acid Transport System of Rhizobium leguminosarum bv. viciae 3841 J. Bacteriol., March 1, 2009; 191(5): 1547 - 1555. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Estrella, S. Munoz, M. J. Soto, O. Ruiz, and J. Sanjuan Genetic Diversity and Host Range of Rhizobia Nodulating Lotus tenuis in Typical Soils of the Salado River Basin (Argentina) Appl. Envir. Microbiol., February 15, 2009; 75(4): 1088 - 1098. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Shimoda, H. Mitsui, H. Kamimatsuse, K. Minamisawa, E. Nishiyama, Y. Ohtsubo, Y. Nagata, M. Tsuda, S. Shinpo, A. Watanabe, et al. Construction of Signature-tagged Mutant Library in Mesorhizobium loti as a Powerful Tool for Functional Genomics DNA Res, October 1, 2008; 15(5): 297 - 308. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Wei, T. Yokoyama, K. Minamisawa, H. Mitsui, M. Itakura, T. Kaneko, S. Tabata, K. Saeki, H. Omori, S. Tajima, et al. Soybean Seed Extracts Preferentially Express Genomic Loci of Bradyrhizobium japonicum in the Initial Interaction with Soybean, Glycine max (L.) Merr DNA Res, August 1, 2008; 15(4): 201 - 214. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Sepulveda, D. Perez-Mendoza, M. A. Ramirez-Romero, M. J. Soto, I. M. Lopez-Lara, O. Geiger, J. Sanjuan, S. Brom, and D. Romero Transcriptional Interference and Repression Modulate the Conjugative Ability of the Symbiotic Plasmid of Rhizobium etli J. Bacteriol., June 15, 2008; 190(12): 4189 - 4197. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 F. J. Lopez-Baena, J. M. Vinardell, F. Perez-Montano, J. C. Crespo-Rivas, R. A. Bellogin, M. d. R. Espuny, and F. J. Ollero Regulation and symbiotic significance of nodulation outer proteins secretion in Sinorhizobium fredii HH103 Microbiology, June 1, 2008; 154(6): 1825 - 1836. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. Mishima, A. Hosokawa, H. Imaizumi-Anraku, K. Saito, M. Kawaguchi, and K. Saeki Requirement for Mesorhizobium loti Ornithine Transcarbamoylase for Successful Symbiosis with Lotus japonicus as Revealed by an Unexpected Long-Range Genome Deletion Plant Cell Physiol., March 1, 2008; 49(3): 301 - 313. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Sivaraman, A. Seshasayee, P. M. Tarwater, and A. M. Cole Codon choice in genes depends on flanking sequence information--implications for theoretical reverse translation Nucleic Acids Res., February 11, 2008; 36(3): e16 - e16. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Martens, P. Dawyndt, R. Coopman, M. Gillis, P. De Vos, and A. Willems Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium) Int J Syst Evol Microbiol, January 1, 2008; 58(1): 200 - 214. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S.-P. Nuccio and A. J. Baumler Evolution of the Chaperone/Usher Assembly Pathway: Fimbrial Classification Goes Greek Microbiol. Mol. Biol. Rev., December 1, 2007; 71(4): 551 - 575. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Kawaharada, S. Eda, K. Minamisawa, and H. Mitsui A Mesorhizobium loti mutant with reduced glucan content shows defective invasion of its host plant Lotus japonicus Microbiology, December 1, 2007; 153(12): 3983 - 3993. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. S. Richardson and I. J. Oresnik L-Rhamnose Transport Is Sugar Kinase (RhaK) Dependent in Rhizobium leguminosarum bv. trifolii J. Bacteriol., December 1, 2007; 189(23): 8437 - 8446. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Okazaki, Y. Hattori, and K. Saeki The Mesorhizobium loti purB Gene Is Involved in Infection Thread Formation and Nodule Development in Lotus japonicus J. Bacteriol., November 15, 2007; 189(22): 8347 - 8352. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Suemori and M. Iwakura A Systematic and Comprehensive Combinatorial Approach to Simultaneously Improve the Activity, Reaction Specificity, and Thermal Stability of p-Hydroxybenzoate Hydroxylase J. Biol. Chem., July 6, 2007; 282(27): 19969 - 19978. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. J. McIntyre, H. Davies, T. A. Hore, S. H. Miller, J.-P. Dufour, and C. W. Ronson Trehalose Biosynthesis in Rhizobium leguminosarum bv. trifolii and Its Role in Desiccation Tolerance Appl. Envir. Microbiol., June 15, 2007; 73(12): 3984 - 3992. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. Giraud, L. Moulin, D. Vallenet, V. Barbe, E. Cytryn, J.-C. Avarre, M. Jaubert, D. Simon, F. Cartieaux, Y. Prin, et al. Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia Science, June 1, 2007; 316(5829): 1307 - 1312. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. M. MacLean, T. M. Finan, and M. J. Sadowsky Genomes of the Symbiotic Nitrogen-Fixing Bacteria of Legumes Plant Physiology, June 1, 2007; 144(2): 615 - 622. [Full Text] [PDF]
|
|
|
|
|
|
N. J. Poysti and I. J. Oresnik Characterization of Sinorhizobium meliloti Triose Phosphate Isomerase Genes J. Bacteriol., May 1, 2007; 189(9): 3445 - 3451. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. Bantinaki, R. Kassen, C. G. Knight, Z. Robinson, A. J. Spiers, and P. B. Rainey Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. III. Mutational Origins of Wrinkly Spreader Diversity Genetics, May 1, 2007; 176(1): 441 - 453. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. G. Barcellos, P. Menna, J. S. da Silva Batista, and M. Hungria Evidence of Horizontal Transfer of Symbiotic Genes from a Bradyrhizobium japonicum Inoculant Strain to Indigenous Diazotrophs Sinorhizobium (Ensifer) fredii and Bradyrhizobium elkanii in a Brazilian Savannah Soil Appl. Envir. Microbiol., April 15, 2007; 73(8): 2635 - 2643. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Martens, M. Delaere, R. Coopman, P. De Vos, M. Gillis, and A. Willems Multilocus sequence analysis of Ensifer and related taxa Int J Syst Evol Microbiol, March 1, 2007; 57(3): 489 - 503. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. N. Bittner, A. Foltz, and V. Oke Only One of Five groEL Genes Is Required for Viability and Successful Symbiosis in Sinorhizobium meliloti J. Bacteriol., March 1, 2007; 189(5): 1884 - 1889. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Shintani, M. Urata, K. Inoue, K. Eto, H. Habe, T. Omori, H. Yamane, and H. Nojiri The Sphingomonas Plasmid pCAR3 Is Involved in Complete Mineralization of Carbazole J. Bacteriol., March 1, 2007; 189(5): 2007 - 2020. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Alvarez-Venegas, M. Sadder, A. Tikhonov, and Z. Avramova Origin of the Bacterial SET Domain Genes: Vertical or Horizontal? Mol. Biol. Evol., February 1, 2007; 24(2): 482 - 497. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. E. Townsend II, L. S. Forsberg, and D. H. Keating Mesorhizobium loti Produces nodPQ-Dependent Sulfated Cell Surface Polysaccharides J. Bacteriol., December 15, 2006; 188(24): 8560 - 8572. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. H. Mauchline, J. E. Fowler, A. K. East, A. L. Sartor, R. Zaheer, A. H. F. Hosie, P. S. Poole, and T. M. Finan Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome PNAS, November 21, 2006; 103(47): 17933 - 17938. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Miyazaki, Y. Sato, M. Ito, Y. Ohtsubo, Y. Nagata, and M. Tsuda Complete Nucleotide Sequence of an Exogenously Isolated Plasmid, pLB1, Involved in {gamma}-Hexachlorocyclohexane Degradation Appl. Envir. Microbiol., November 1, 2006; 72(11): 6923 - 6933. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Karunakaran, K. Ebert, S. Harvey, M. E. Leonard, V. Ramachandran, and P. S. Poole Thiamine Is Synthesized by a Salvage Pathway in Rhizobium leguminosarum bv. viciae Strain 3841. J. Bacteriol., September 1, 2006; 188(18): 6661 - 6668. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. M. MacLean, G. MacPherson, P. Aneja, and T. M. Finan Characterization of the {beta}-Ketoadipate Pathway in Sinorhizobium meliloti Appl. Envir. Microbiol., August 1, 2006; 72(8): 5403 - 5413. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Nukui, K. Minamisawa, S.-I. Ayabe, and T. Aoki Expression of the 1-Aminocyclopropane-1-Carboxylic Acid Deaminase Gene Requires Symbiotic Nitrogen-Fixing Regulator Gene nifA2 in Mesorhizobium loti MAFF303099. Appl. Envir. Microbiol., July 1, 2006; 72(7): 4964 - 4969. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Meyer, S. Cunnac, M. Gueneron, C. Declercq, F. Van Gijsegem, E. Lauber, C. Boucher, and M. Arlat PopF1 and PopF2, Two Proteins Secreted by the Type III Protein Secretion System of Ralstonia solanacearum, Are Translocators Belonging to the HrpF/NopX Family J. Bacteriol., July 1, 2006; 188(13): 4903 - 4917. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. A. Fox, J. P. White, A. H. F. Hosie, E. M. Lodwig, and P. S. Poole Osmotic Upshift Transiently Inhibits Uptake via ABC Transporters in Gram-Negative Bacteria. J. Bacteriol., July 1, 2006; 188(14): 5304 - 5307. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. K. Yost, A. M. Rath, T. C. Noel, and M. F. Hynes Characterization of genes involved in erythritol catabolism in Rhizobium leguminosarum bv. viciae Microbiology, July 1, 2006; 152(7): 2061 - 2074. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Ohta, T. Kawabata, K. Nishikawa, A. Tani, K. Kimbara, and F. Kawai Analysis of Amino Acid Residues Involved in Catalysis of Polyethylene Glycol Dehydrogenase from Sphingopyxis terrae, Using Three-Dimensional Molecular Modeling-Based Kinetic Characterization of Mutants. Appl. Envir. Microbiol., June 1, 2006; 72(6): 4388 - 4396. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Stiens, S. Schneiker, M. Keller, S. Kuhn, A. Puhler, and A. Schluter Sequence Analysis of the 144-Kilobase Accessory Plasmid pSmeSM11a, Isolated from a Dominant Sinorhizobium meliloti Strain Identified during a Long-Term Field Release Experiment. Appl. Envir. Microbiol., May 1, 2006; 72(5): 3662 - 3672. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. N. Bittner and V. Oke Multiple groESL Operons Are Not Key Targets of RpoH1 and RpoH2 in Sinorhizobium meliloti. J. Bacteriol., May 1, 2006; 188(10): 3507 - 3515. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 I. Schneider, A. M. Queenan, and A. Bauernfeind Novel Carbapenem-Hydrolyzing Oxacillinase OXA-62 from Pandoraea pnomenusa. Antimicrob. Agents Chemother., April 1, 2006; 50(4): 1330 - 1335. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Gonzalez, R. I. Santamaria, P. Bustos, I. Hernandez-Gonzalez, A. Medrano-Soto, G. Moreno-Hagelsieb, S. C. Janga, M. A. Ramirez, V. Jimenez-Jacinto, J. Collado-Vides, et al. The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons PNAS, March 7, 2006; 103(10): 3834 - 3839. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Wang, D. J. Meek, P. Panchal, N. Boruvka, F. S. Archibald, B. T. Driscoll, and T. C. Charles Isolation of Poly-3-Hydroxybutyrate Metabolism Genes from Complex Microbial Communities by Phenotypic Complementation of Bacterial Mutants Appl. Envir. Microbiol., January 1, 2006; 72(1): 384 - 391. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Delgado, A. Tresierra-Ayala, C. Talbi, and E. J. Bedmar Functional characterization of the Bradyrhizobium japonicum modA and modB genes involved in molybdenum transport Microbiology, January 1, 2006; 152(1): 199 - 207. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Z.-C. Yuan, R. Zaheer, R. Morton, and T. M. Finan Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria. Nucleic Acids Res., January 1, 2006; 34(9): 2686 - 2697. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Flores, L. Morales, A. Avila, V. Gonzalez, P. Bustos, D. Garcia, Y. Mora, X. Guo, J. Collado-Vides, D. Pinero, et al. Diversification of DNA Sequences in the Symbiotic Genome of Rhizobium etli J. Bacteriol., November 1, 2005; 187(21): 7185 - 7192. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Takeuchi, S. Watanabe, T. Baba, H. Yuzawa, T. Ito, Y. Morimoto, M. Kuroda, L. Cui, M. Takahashi, A. Ankai, et al. Whole-Genome Sequencing of Staphylococcus haemolyticus Uncovers the Extreme Plasticity of Its Genome and the Evolution of Human-Colonizing Staphylococcal Species J. Bacteriol., November 1, 2005; 187(21): 7292 - 7308. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Itaya, K. Tsuge, M. Koizumi, and K. Fujita From The Cover: Combining two genomes in one cell: Stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome PNAS, November 1, 2005; 102(44): 15971 - 15976. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Sato, M. Monincova, R. Chaloupkova, Z. Prokop, Y. Ohtsubo, K. Minamisawa, M. Tsuda, J. Damborsky, and Y. Nagata Two Rhizobial Strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, Encode Haloalkane Dehalogenases with Novel Structures and Substrate Specificities Appl. Envir. Microbiol., August 1, 2005; 71(8): 4372 - 4379. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Kumar, A. Bourdes, and P. Poole De Novo Alanine Synthesis by Bacteroids of Mesorhizobium loti Is Not Required for Nitrogen Transfer in the Determinate Nodules of Lotus corniculatus J. Bacteriol., August 1, 2005; 187(15): 5493 - 5495. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Shibata, H. Mitsui, and H. Kouchi Acetylation of a Fucosyl Residue at the Reducing End of Mesorhizobium loti Nod Factors is Not Essential for Nodulation of Lotus japonicus Plant Cell Physiol., June 1, 2005; 46(6): 1016 - 1020. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. H. Badger, J. A. Eisen, and N. L. Ward Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales Int J Syst Evol Microbiol, May 1, 2005; 55(3): 1021 - 1026. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Brencic and S. C. Winans Detection of and Response to Signals Involved in Host-Microbe Interactions by Plant-Associated Bacteria Microbiol. Mol. Biol. Rev., March 1, 2005; 69(1): 155 - 194. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Shimoda, M. Nagata, A. Suzuki, M. Abe, S. Sato, T. Kato, S. Tabata, S. Higashi, and T. Uchiumi Symbiotic Rhizobium and Nitric Oxide Induce Gene Expression of Non-symbiotic Hemoglobin in Lotus japonicus Plant Cell Physiol., January 15, 2005; 46(1): 99 - 107. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Brom, L. Girard, C. Tun-Garrido, A. Garcia-de los Santos, P. Bustos, V. Gonzalez, and D. Romero Transfer of the Symbiotic Plasmid of Rhizobium etli CFN42 Requires Cointegration with p42a, Which May Be Mediated by Site-Specific Recombination J. Bacteriol., November 15, 2004; 186(22): 7538 - 7548. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Girlich, T. Naas, and P. Nordmann OXA-60, a Chromosomal, Inducible, and Imipenem-Hydrolyzing Class D {beta}-Lactamase from Ralstonia pickettii Antimicrob. Agents Chemother., November 1, 2004; 48(11): 4217 - 4225. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Ma, T. C. Charles, and B. R. Glick Expression of an Exogenous 1-Aminocyclopropane-1-Carboxylate Deaminase Gene in Sinorhizobium meliloti Increases Its Ability To Nodulate Alfalfa Appl. Envir. Microbiol., October 1, 2004; 70(10): 5891 - 5897. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. H. Kaufusi, L. S. Forsberg, P. Tittabutr, and D. Borthakur Regulation of exopolysaccharide synthesis in Rhizobium sp. strain TAL1145 involves an alternative sigma factor gene, rpoH2 Microbiology, October 1, 2004; 150(10): 3473 - 3482. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Medrano-Soto, G. Moreno-Hagelsieb, P. Vinuesa, J. A. Christen, and J. Collado-Vides Successful Lateral Transfer Requires Codon Usage Compatibility Between Foreign Genes and Recipient Genomes Mol. Biol. Evol., October 1, 2004; 21(10): 1884 - 1894. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Perez-Mendoza, A. Dominguez-Ferreras, S. Munoz, M. J. Soto, J. Olivares, S. Brom, L. Girard, J. A. Herrera-Cervera, and J. Sanjuan Identification of Functional mob Regions in Rhizobium etli: Evidence for Self-Transmissibility of the Symbiotic Plasmid pRetCFN42d J. Bacteriol., September 1, 2004; 186(17): 5753 - 5761. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Suzuki, Y. Nakano, A. Yoshida, Y. Yamashita, and Y. Kiyoura Real-Time TaqMan PCR for Quantifying Oral Bacteria during Biofilm Formation J. Clin. Microbiol., August 1, 2004; 42(8): 3827 - 3830. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Ausmees, H. Kobayashi, W. J. Deakin, C. Marie, H. B. Krishnan, W. J. Broughton, and X. Perret Characterization of NopP, a Type III Secreted Effector of Rhizobium sp. Strain NGR234 J. Bacteriol., July 15, 2004; 186(14): 4774 - 4780. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Ferrieres, A. Francez-Charlot, J. Gouzy, S. Rouille, and D. Kahn FixJ-regulated genes evolved through promoter duplication in Sinorhizobium meliloti Microbiology, July 1, 2004; 150(7): 2335 - 2345. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Anton, M. V. Mendes, J. F. Martin, and J. F. Aparicio Identification of PimR as a Positive Regulator of Pimaricin Biosynthesis in Streptomyces natalensis J. Bacteriol., May 1, 2004; 186(9): 2567 - 2575. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Uchiumi, T. Ohwada, M. Itakura, H. Mitsui, N. Nukui, P. Dawadi, T. Kaneko, S. Tabata, T. Yokoyama, K. Tejima, et al. Expression Islands Clustered on the Symbiosis Island of the Mesorhizobium loti Genome J. Bacteriol., April 15, 2004; 186(8): 2439 - 2448. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Itoh, Y. Tashiro, K. Uobe, Y. Kamagata, K. Suyama, and H. Yamamoto Root Nodule Bradyrhizobium spp. Harbor tfdA{alpha} and cadA, Homologous with Genes Encoding 2,4-Dichlorophenoxyacetic Acid-Degrading Proteins Appl. Envir. Microbiol., April 1, 2004; 70(4): 2110 - 2118. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Yun, S. Lim, B.-K. Cho, and B.-G. Kim {omega}-Amino Acid:Pyruvate Transaminase from Alcaligenes denitrificans Y2k-2: a New Catalyst for Kinetic Resolution of {beta}-Amino Acids and Amines Appl. Envir. Microbiol., April 1, 2004; 70(4): 2529 - 2534. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Moris, B. Dombrecht, C. Xi, J. Vanderleyden, and J. Michiels Regulatory Role of Rhizobium etli CNPAF512 fnrN during Symbiosis Appl. Envir. Microbiol., March 1, 2004; 70(3): 1287 - 1296. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Yoshimura, K. Asai, Y. Sadaie, and H. Yoshikawa Interaction of Bacillus subtilis extracytoplasmic function (ECF) sigma factors with the N-terminal regions of their potential anti-sigma factors Microbiology, March 1, 2004; 150(3): 591 - 599. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. T. Jones, T. Al-Samarrai, J. M. Reeves, G. B. Ryan, C. A. Kirk, E. Vincze, D. Harvey, M. McCambridge, D. Greenwood, and P. H. S. Reynolds The trans-Acting Protein Interacting with the DNA Motif Proximal to the Transcriptional Start Site of Plant L-Asparaginase Is Bacterial Sarcosine Oxidase J. Bacteriol., February 1, 2004; 186(3): 811 - 817. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Lodwig, S. Kumar, D. Allaway, A. Bourdes, J. Prell, U. Priefer, and P. Poole Regulation of L-Alanine Dehydrogenase in Rhizobium leguminosarum bv. viciae and Its Role in Pea Nodules J. Bacteriol., February 1, 2004; 186(3): 842 - 849. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. L. Farmer and M. S. Thomas Isolation and Characterization of Burkholderia cenocepacia Mutants Deficient in Pyochelin Production: Pyochelin Biosynthesis Is Sensitive to Sulfur Availability J. Bacteriol., January 15, 2004; 186(2): 270 - 277. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. S. Forsberg, K. D. Noel, J. Box, and R. W. Carlson Genetic Locus and Structural Characterization of the Biochemical Defect in the O-Antigenic Polysaccharide of the Symbiotically Deficient Rhizobium etli Mutant, CE166: REPLACEMENT OF N-ACETYLQUINOVOSAMINE WITH ITS HEXOSYL-4-ULOSE PRECURSOR J. Biol. Chem., December 19, 2003; 278(51): 51347 - 51359. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Martinez-Morales, M. Schobert, I. M. Lopez-Lara, and O. Geiger Pathways for phosphatidylcholine biosynthesis in bacteria Microbiology, December 1, 2003; 149(12): 3461 - 3471. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Tsuge, K. Matsui, and M. Itaya One step assembly of multiple DNA fragments with a designed order and orientation in Bacillus subtilis plasmid Nucleic Acids Res., November 1, 2003; 31(21): e133 - e133. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Karbarz, S. R. Kalb, R. J. Cotter, and C. R. H. Raetz Expression Cloning and Biochemical Characterization of a Rhizobium leguminosarum Lipid A 1-Phosphatase J. Biol. Chem., October 10, 2003; 278(41): 39269 - 39279. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Pfluger, S. Baumann, G. Gottschalk, W. Lin, H. Santos, and V. Muller Lysine-2,3-Aminomutase and {beta}-Lysine Acetyltransferase Genes of Methanogenic Archaea Are Salt Induced and Are Essential for the Biosynthesis of N{varepsilon}-Acetyl-{beta}-Lysine and Growth at High Salinity Appl. Envir. Microbiol., October 1, 2003; 69(10): 6047 - 6055. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 X. Guo, M. Flores, P. Mavingui, S. I. Fuentes, G. Hernandez, G. Davila, and R. Palacios Natural Genomic Design in Sinorhizobium meliloti: Novel Genomic Architectures Genome Res., August 1, 2003; 13(8): 1810 - 1817. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. P. Stafford, J. Scanlan, I. R. McDonald, and J. C. Murrell rpoN, mmoR and mmoG, genes involved in regulating the expression of soluble methane monooxygenase in Methylosinus trichosporium OB3b Microbiology, July 1, 2003; 149(7): 1771 - 1784. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Kato, Y. Okamura, K. Kanahama, and Y. Kanayama Nitrate-independent expression of plant nitrate reductase in Lotus japonicus root nodules J. Exp. Bot., July 1, 2003; 54(388): 1685 - 1690. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Karlin, M. J. Barnett, A. M. Campbell, R. F. Fisher, and J. Mrazek Predicting gene expression levels from codon biases in {alpha}-proteobacterial genomes PNAS, June 10, 2003; 100(12): 7313 - 7318. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Monreal, M. J. Grillo, D. Gonzalez, C. M. Marin, M. J. De Miguel, I. Lopez-Goni, J. M. Blasco, A Cloeckaert, and I. Moriyon Characterization of Brucella abortus O-Polysaccharide and Core Lipopolysaccharide Mutants and Demonstration that a Complete Core Is Required for Rough Vaccines To Be Efficient against Brucella abortus and Brucella ovis in the Mouse Model Infect. Immun., June 1, 2003; 71(6): 3261 - 3271. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. del Carmen Vargas, S. Encarnacion, A. Davalos, A. Reyes-Perez, Y. Mora, A. Garcia-de los Santos, S. Brom, and J. Mora Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon Microbiology, May 1, 2003; 149(5): 1165 - 1176. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. I. Kanipes, A. A. Ribeiro, S. Lin, R. J. Cotter, and C. R. H. Raetz A Mannosyl Transferase Required for Lipopolysaccharide Inner Core Assembly in Rhizobium leguminosarum. PURIFICATION, SUBSTRATE SPECIFICITY, AND EXPRESSION IN SALMONELLA waaC MUTANTS J. Biol. Chem., April 25, 2003; 278(18): 16356 - 16364. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Daubin and G. Perriere G+C3 Structuring Along the Genome: A Common Feature in Prokaryotes Mol. Biol. Evol., April 1, 2003; 20(4): 471 - 483. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. R. R. Cussiol, S. V. Alves, M. Antonio de Oliveira, and L. E. S. Netto Organic Hydroperoxide Resistance Gene Encodes a Thiol-dependent Peroxidase J. Biol. Chem., March 21, 2003; 278(13): 11570 - 11578. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Hattori, H. Omori, M. Hanyu, N. Kaseda, E. Mishima, T. Kaneko, S. Tabata, and K. Saeki Ordered Cosmid Library of the Mesorhizobium loti MAFF303099 Genome for Systematic Gene Disruption and Complementation Analysis Plant Cell Physiol., December 15, 2002; 43(12): 1542 - 1557. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Goffin and J.-M. Ghuysen Biochemistry and Comparative Genomics of SxxK Superfamily Acyltransferases Offer a Clue to the Mycobacterial Paradox: Presence of Penicillin-Susceptible Target Proteins versus Lack of Efficiency of Penicillin as Therapeutic Agent Microbiol. Mol. Biol. Rev., December 1, 2002; 66(4): 702 - 738. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Uchiumi, Y. Shimoda, T. Tsuruta, Y. Mukoyoshi, A. Suzuki, K. Senoo, S. Sato, T. Kato, S. Tabata, S. Higashi, et al. Expression of Symbiotic and Nonsymbiotic Globin Genes Responding to Microsymbionts on Lotus japonicus Plant Cell Physiol., November 15, 2002; 43(11): 1351 - 1358. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Tibor, V. Wansard, V. Bielartz, R.-M. Delrue, I. Danese, P. Michel, K. Walravens, J. Godfroid, and J.-J. Letesson Effect of omp10 or omp19 Deletion on Brucella abortus Outer Membrane Properties and Virulence in Mice Infect. Immun., October 1, 2002; 70(10): 5540 - 5546. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. H. F. Hosie, D. Allaway, and P. S. Poole A Monocarboxylate Permease of Rhizobium leguminosarum Is the First Member of a New Subfamily of Transporters J. Bacteriol., October 1, 2002; 184(19): 5436 - 5448. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. T. Paulsen, R. Seshadri, K. E. Nelson, J. A. Eisen, J. F. Heidelberg, T. D. Read, R. J. Dodson, L. Umayam, L. M. Brinkac, M. J. Beanan, et al. The Brucellasuis genome reveals fundamental similarities between animal and plant pathogens and symbionts PNAS, October 1, 2002; 99(20): 13148 - 13153. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. S. Basu, M. J. Karbarz, and C. R. H. Raetz Expression Cloning and Characterization of the C28 Acyltransferase of Lipid A Biosynthesis in Rhizobium leguminosarum J. Biol. Chem., August 2, 2002; 277(32): 28959 - 28971. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Jesenska, M. Bartos, V. Czernekova, I. Rychlik, I. Pavlik, and J. Damborsky Cloning and Expression of the Haloalkane Dehalogenase Gene dhmA from Mycobacterium avium N85 and Preliminary Characterization of DhmA Appl. Envir. Microbiol., August 1, 2002; 68(8): 3724 - 3730. [Abstract] [Full Text] [PDF]
|
|